Erick Armingol

Affiliations

Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA, 92093, USA.
Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92093, USA.

Publications (10)

Combining LIANA and Tensor-cell2cell to decipher cell-cell communication across multiple samples.

bioRxiv : the preprint server for biology

Avec: Hratch Baghdassarian , Daniel Dimitrov , Erick Armingol , Julio Saez-Rodriguez , Nathan E Lewis

Inferring a spatial code of cell-cell interactions across a whole animal body.

PLoS computational biology

Avec: Erick Armingol , Abbas Ghaddar , Chintan J Joshi , Hratch Baghdassarian , Isaac Shamie , Jason Chan , Hsuan-Lin Her , Samuel Berhanu , Anushka Dar , Fabiola Rodriguez-Armstrong , Olivia Yang , Eyleen J O'Rourke , Nathan E Lewis

The diversification of methods for studying cell-cell interactions and communication.

Nature reviews. Genetics

Avec: Erick Armingol , Hratch M Baghdassarian , Nathan E Lewis

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity.

bioRxiv : the preprint server for biology

Avec: Cameron Martino , Benjamin P Kellman , Daniel R Sandoval , Thomas Mandel Clausen , Clarisse A Marotz , Se Jin Song , Stephen Wandro , Livia S Zaramela , Rodolfo Antonio Salido Benítez , Qiyun Zhu , Erick Armingol , Yoshiki Vázquez-Baeza , Daniel McDonald , James T Sorrentino , Bryn Taylor , Pedro Belda-Ferre , Chenguang Liang , Yujie Zhang , Luca Schifanella , Nichole R Klatt , Aki S Havulinna , Pekka Jousilahti , Shi Huang , Niina Haiminen , Laxmi Parida , Ho-Cheol Kim , Austin D Swafford , Karsten Zengler , Susan Cheng , Michael Inouye , Teemu Niiranen , Mohit Jain , Veikko Salomaa , Jeffrey D Esko , Nathan E Lewis , Rob Knight

Deciphering cell-cell interactions and communication from gene expression.

Nature reviews. Genetics

Avec: Erick Armingol , Adam Officer , Olivier Harismendy , Nathan E Lewis

Combining LIANA and Tensor-cell2cell to decipher cell-cell communication across multiple samples.

Cell reports methods

Avec: Hratch M Baghdassarian , Daniel Dimitrov , Erick Armingol , Julio Saez-Rodriguez , Nathan E Lewis

An improved algorithm for flux variability analysis.

BMC bioinformatics

Avec: Dustin Kenefake , Erick Armingol , Nathan E Lewis , Efstratios N Pistikopoulos

Context-aware deconvolution of cell-cell communication with Tensor-cell2cell.

Nature communications

Avec: Erick Armingol , Hratch M Baghdassarian , Cameron Martino , Araceli Perez-Lopez , Caitlin Aamodt , Rob Knight , Nathan E Lewis

Whole-body gene expression atlas of an adult metazoan.

Science advances

Avec: Abbas Ghaddar , Erick Armingol , Chau Huynh , Louis Gevirtzman , Nathan E Lewis , Robert Waterston , Eyleen J O'Rourke

Decoding glycosylation potential from protein structure across human glycoproteins with a multi-view recurrent neural network.

bioRxiv : the preprint server for biology

Avec: Ben Kellman , Julien Mariethoz , Yujie Zhang , Sigal Shaul , Mia Jeffris , Daniel Sandoval , Mia Jeffris , Erick Armingol , Bokan Bao , Frederique Lisacek , Daniel Bojar , Nathan Lewis

Réseau de co-auteurs

Nathan E Lewis 9 collaborations

Hratch M Baghdassarian 3 collaborations

Hratch Baghdassarian 2 collaborations

Daniel Dimitrov 2 collaborations

Julio Saez-Rodriguez 2 collaborations

Abbas Ghaddar 2 collaborations

Eyleen J O'Rourke 2 collaborations

Cameron Martino 2 collaborations

Yujie Zhang 2 collaborations

Rob Knight 2 collaborations

Mia Jeffris 2 collaborations

Chintan J Joshi 1 collaboration

Isaac Shamie 1 collaboration

Jason Chan 1 collaboration

Hsuan-Lin Her 1 collaboration

Samuel Berhanu 1 collaboration

Anushka Dar 1 collaboration

Fabiola Rodriguez-Armstrong 1 collaboration

Olivia Yang 1 collaboration

Benjamin P Kellman 1 collaboration

Daniel R Sandoval 1 collaboration

Thomas Mandel Clausen 1 collaboration

Clarisse A Marotz 1 collaboration

Se Jin Song 1 collaboration

Stephen Wandro 1 collaboration

Livia S Zaramela 1 collaboration

Rodolfo Antonio Salido Benítez 1 collaboration

Qiyun Zhu 1 collaboration

Yoshiki Vázquez-Baeza 1 collaboration

Daniel McDonald 1 collaboration

James T Sorrentino 1 collaboration

Bryn Taylor 1 collaboration

Pedro Belda-Ferre 1 collaboration

Chenguang Liang 1 collaboration

Luca Schifanella 1 collaboration

Nichole R Klatt 1 collaboration

Aki S Havulinna 1 collaboration

Pekka Jousilahti 1 collaboration

Shi Huang 1 collaboration

Niina Haiminen 1 collaboration

Laxmi Parida 1 collaboration

Ho-Cheol Kim 1 collaboration

Austin D Swafford 1 collaboration

Karsten Zengler 1 collaboration

Susan Cheng 1 collaboration

Michael Inouye 1 collaboration

Teemu Niiranen 1 collaboration

Mohit Jain 1 collaboration

Veikko Salomaa 1 collaboration

Jeffrey D Esko 1 collaboration

Adam Officer 1 collaboration

Olivier Harismendy 1 collaboration

Dustin Kenefake 1 collaboration

Efstratios N Pistikopoulos 1 collaboration

Araceli Perez-Lopez 1 collaboration

Caitlin Aamodt 1 collaboration

Chau Huynh 1 collaboration

Louis Gevirtzman 1 collaboration

Robert Waterston 1 collaboration

Ben Kellman 1 collaboration

Julien Mariethoz 1 collaboration

Sigal Shaul 1 collaboration

Daniel Sandoval 1 collaboration

Bokan Bao 1 collaboration

Frederique Lisacek 1 collaboration

Daniel Bojar 1 collaboration

Nathan Lewis 1 collaboration